Product
SeekOne DD
SeekSpace
Sample Handling
Instruments
Analysis Software

scMethyl + RNA-seq

Simultaneous single-cell methylation and RNA profiling at single-base resolution for integrated epigenetic and transcriptional insights.

scATAC + RNA-seq

Matched chromatin accessibility and gene expression from the same nucleus for integrated multi-omic insights.

scFAST-seq

Random-primed single-cell RNA sequencing achieving uniform, near full-length coverage and broad RNA compatibility.

scMLPseq

Probe-based single-nucleus RNA sequencing for FFPE samples, briefly PFA-fixed cells and nuclei with high specificity and sensitivity.

5' + Immune Profiling

Simultaneous profiling of transcriptome and immune repertoire for precise clonotype tracking and immune diversity analysis.

3'scRNA-seq

High-throughput single-cell RNA profiling for precise cellular state and gene expression analysis.
scMethyl + RNA-seq
scMethyl + RNA-seq
Simultaneous single-cell methylation and RNA profiling at single-base resolution for integrated epigenetic and transcriptional insights.
scATAC + RNA-seq
scATAC + RNA-seq
Matched chromatin accessibility and gene expression from the same nucleus for integrated multi-omic insights.
scFAST-seq
scFAST-seq
Random-primed single-cell RNA sequencing achieving uniform, near full-length coverage and broad RNA compatibility.
scMLPseq
scMLPseq
Probe-based single-nucleus RNA sequencing for FFPE samples, briefly PFA-fixed cells and nuclei with high specificity and sensitivity.
5' + Immune Profiling
5' + Immune Profiling
Simultaneous profiling of transcriptome and immune repertoire for precise clonotype tracking and immune diversity analysis.
3'scRNA-seq
3'scRNA-seq
High-throughput single-cell RNA profiling for precise cellular state and gene expression analysis.

scSpatial-seq

True single-nucleus spatial transcriptomics combining spatial localization and gene expression from the same tissue slice.
scSpatial-seq
scSpatial-seq
True single-nucleus spatial transcriptomics combining spatial localization and gene expression from the same tissue slice.

Tissue Dissociation

Universal enzymatic dissociation solution optimized for human and mouse tissues, delivering high-yield, high-viability single cells for sequencing and cell-based assays.

FFPE Dissociation

Dedicated nuclei preparation kit designed for FFPE tissues, optimized for compatibility with SeekOne™ FFPE RNA and MLPSeq workflows.

AO/PI Staining

Dual-fluorescence viability dye compatible with the SeekMate Tinitan™ fluorescence cell counter.

Cell Counter Chip

Six Samples. One Chip. Reliable Results.

Nuclei Isolation Kit

Isolate intact nuclei from fresh/frozen tissues for single-cell & epigenetic research.

DNA Clean Beads

SPRI technology, validated alternative to AMPure XP & SPRSelect beads.

RNase Inhibitor

Recombinant murine RNase Inhibitor shields RNA against RNase degradation in vitro.

dsDNA HS Assay Kit

Ultra-sensitive dsDNA quantitation, robust, simple and RNA-insensitive assay.
Tissue Dissociation
Tissue Dissociation
Universal enzymatic dissociation solution optimized for human and mouse tissues, delivering high-yield, high-viability single cells for sequencing and cell-based assays.
FFPE Dissociation
FFPE Dissociation
Dedicated nuclei preparation kit designed for FFPE tissues, optimized for compatibility with SeekOne™ FFPE RNA and MLPSeq workflows.
AO/PI Staining
AO/PI Staining
Dual-fluorescence viability dye compatible with the SeekMate Tinitan™ fluorescence cell counter.
Cell Counter Chip
Cell Counter Chip
Six Samples. One Chip. Reliable Results.
Nuclei Isolation Kit
Nuclei Isolation Kit
Isolate intact nuclei from fresh/frozen tissues for single-cell & epigenetic research.
DNA Clean Beads
DNA Clean Beads
SPRI technology, validated alternative to AMPure XP & SPRSelect beads.
RNase Inhibitor
RNase Inhibitor
Recombinant murine RNase Inhibitor shields RNA against RNase degradation in vitro.
dsDNA HS Assay Kit
dsDNA HS Assay Kit
Ultra-sensitive dsDNA quantitation, robust, simple and RNA-insensitive assay.

Digital Droplet System

A high-throughput, automated single-cell multi-omics platform based on microfluidic water-in-oil technology for single cell/nucleus separation and barcoding.

Cell Counter

Accurate, Fast & Cost-Efficient: Compact Cell Counter for Brightfield & Fluorescence Imaging.
Digital Droplet System
Digital Droplet System
A high-throughput, automated single-cell multi-omics platform based on microfluidic water-in-oil technology for single cell/nucleus separation and barcoding.
Cell Counter
Cell Counter
Accurate, Fast & Cost-Efficient: Compact Cell Counter for Brightfield & Fluorescence Imaging.

SeekSoul Online

Cloud-based platform for single-cell multi-omic data analysis and visualization — zero code, full workflow, accessible anywhere.

SeekSoul Tools

Comprehensive software suite for processing SeekOne™ single-cell transcriptome data, covering RNA, full-length, FFPE, and immune repertoire analyses.

SeekSpace Tools

Dedicated analysis software for SeekSpace™ spatial transcriptomics, integrating single-nucleus expression profiling with precise spatial localization and visualization.

SeekArc Tools

Analysis toolkit for SeekOne™ Multiome ATAC + RNA data, integrating chromatin accessibility and transcriptome quantification for joint downstream analysis.
SeekSoul Online
SeekSoul Online
Cloud-based platform for single-cell multi-omic data analysis and visualization — zero code, full workflow, accessible anywhere.
SeekSoul Tools
SeekSoul Tools
Comprehensive software suite for processing SeekOne™ single-cell transcriptome data, covering RNA, full-length, FFPE, and immune repertoire analyses.
SeekSpace Tools
SeekSpace Tools
Dedicated analysis software for SeekSpace™ spatial transcriptomics, integrating single-nucleus expression profiling with precise spatial localization and visualization.
SeekArc Tools
SeekArc Tools
Analysis toolkit for SeekOne™ Multiome ATAC + RNA data, integrating chromatin accessibility and transcriptome quantification for joint downstream analysis.
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Product
SeekOne DD
scMethyl + RNA-seq
scATAC + RNA-seq
scFAST-seq
scMLPseq
5' + Immune Profiling
3'scRNA-seq
SeekSpace
scSpatial-seq
Sample Handling
Tissue Dissociation
FFPE Dissociation
AO/PI Staining
Cell Counter Chip
Nuclei Isolation Kit
DNA Clean Beads
RNase Inhibitor
dsDNA HS Assay Kit
Instruments
Digital Droplet System
Cell Counter
Analysis Software
SeekSoul Online
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SeekSpace Tools
SeekArc Tools
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What sample types are compatible with SeekOne DD 3' scRNA-seq?

2026-06-23

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Answer:
The SeekOne DD 3' scRNA-seq workflow is compatible with a variety of sample types, including:

  • Fresh tissues 
  • Frozen tissues (via nuclei isolation) 
  • Cell suspensions 
  • Nuclei suspensions 
  • Plant protoplasts 

The recommended particle size range is 5–40 μm.

Detailed guidance is provided below:

  • Fresh tissues:
    Strongly recommended. Samples should be processed as soon as possible after collection to preserve cell viability. 
  • Frozen tissues:
    Must be snap-frozen in liquid nitrogen. Only nuclei can be used for downstream processing. 
  • Cell suspensions:
    Recommended quality metrics include: 
    • Viability >90% 
    • Aggregation rate <10% 
    • Nucleated cell proportion >70% 
  • Nuclei suspensions:
    Suitable for large cells or tissues that are difficult to dissociate (see Q3). 
  • Plant protoplasts:
    Applicable after removal of the cell wall. 

Important:
This workflow is not compatible with FFPE samples.

 

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