SeekOne DD

SeekSpace

Sample Handling

Instruments

Analysis Software

scMethyl + RNA-seq

Simultaneous single-cell methylation and RNA profiling at single-base resolution for integrated epigenetic and transcriptional insights.

scATAC + RNA-seq

Matched chromatin accessibility and gene expression from the same nucleus for integrated multi-omic insights.

FFPE scRNA-seq

Dual de-crosslinking and dual reverse transcription improve RNA recovery and coverage for archived FFPE samples.

scFAST-seq

Random-primed single-cell RNA sequencing achieving uniform, near full-length coverage and broad RNA compatibility.

5' + Immune Profiling

Simultaneous profiling of transcriptome and immune repertoire for precise clonotype tracking and immune diversity analysis.

3'scRNA-seq

High-throughput single-cell RNA profiling for precise cellular state and gene expression analysis.

scMethyl + RNA-seq

Simultaneous single-cell methylation and RNA profiling at single-base resolution for integrated epigenetic and transcriptional insights.

scATAC + RNA-seq

Matched chromatin accessibility and gene expression from the same nucleus for integrated multi-omic insights.

FFPE scRNA-seq

Dual de-crosslinking and dual reverse transcription improve RNA recovery and coverage for archived FFPE samples.

scFAST-seq

Random-primed single-cell RNA sequencing achieving uniform, near full-length coverage and broad RNA compatibility.

5' + Immune Profiling

Simultaneous profiling of transcriptome and immune repertoire for precise clonotype tracking and immune diversity analysis.

3'scRNA-seq

High-throughput single-cell RNA profiling for precise cellular state and gene expression analysis.

Spatial-seq

True single-nucleus spatial transcriptomics combining spatial localization and gene expression from the same tissue slice.

Spatial-seq

True single-nucleus spatial transcriptomics combining spatial localization and gene expression from the same tissue slice.

Tissue Dissociation

Universal enzymatic dissociation solution optimized for human and mouse tissues, delivering high-yield, high-viability single cells for sequencing and cell-based assays.

FFPE Dissociation

Dedicated nuclei preparation kit designed for FFPE tissues, optimized for compatibility with SeekOne™ FFPE RNA and MLPSeq workflows.

AO/PI Staining

Dual-fluorescence viability dye compatible with the SeekMate Tinitan™ fluorescence cell counter.

Cell Counter Chip

Six Samples. One Chip. Reliable Results.

Tissue Dissociation

Universal enzymatic dissociation solution optimized for human and mouse tissues, delivering high-yield, high-viability single cells for sequencing and cell-based assays.

FFPE Dissociation

Dedicated nuclei preparation kit designed for FFPE tissues, optimized for compatibility with SeekOne™ FFPE RNA and MLPSeq workflows.

AO/PI Staining

Dual-fluorescence viability dye compatible with the SeekMate Tinitan™ fluorescence cell counter.

Cell Counter Chip

Six Samples. One Chip. Reliable Results.

Digital Droplet System

A high-throughput, automated single-cell multi-omics platform based on microfluidic water-in-oil technology for single cell/nucleus separation and barcoding.

Cell Counter

Accurate, Fast & Cost-Efficient: Compact Cell Counter for Brightfield & Fluorescence Imaging.

Digital Droplet System

A high-throughput, automated single-cell multi-omics platform based on microfluidic water-in-oil technology for single cell/nucleus separation and barcoding.

Cell Counter

Accurate, Fast & Cost-Efficient: Compact Cell Counter for Brightfield & Fluorescence Imaging.

Cloud-based platform for single-cell multi-omic data analysis and visualization — zero code, full workflow, accessible anywhere.

SeekSoul Tools

Comprehensive software suite for processing SeekOne™ single-cell transcriptome data, covering RNA, full-length, FFPE, and immune repertoire analyses.

SeekSpace Tools

Dedicated analysis software for SeekSpace™ spatial transcriptomics, integrating single-nucleus expression profiling with precise spatial localization and visualization.

SeekArc Tools

Analysis toolkit for SeekOne™ Multiome ATAC + RNA data, integrating chromatin accessibility and transcriptome quantification for joint downstream analysis.

FAQ

About SeekGene News

5' + Immune Profiling

Digital Droplet System

Zero Expression of a Specific Gene in the Matrix

Release date : Jan 27,2026

During quantification, if a read aligns to both gene A and gene B:

In versions prior to 1.2.0, such reads were discarded.
In version 1.2.0 and later, the gene positions are further evaluated. If the read aligns to the exon region of only one gene, it is assigned to that gene.

Extract reads with the target gene (using Ensembl ID, not symbol) from the 'XT' tag in step2/featureCounts/*_SortedByName.bam. Then check whether: The 'XT'tag contains multiple genes, and the target gene aligns to a non-exon region or The 'XT' tag contains multiple genes aligning to exon regions.